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Including CVEs outside Waratek scope✕Vendor samtools✕
Overview 3 matches · 1 in Waratek scope · 0 protected · 0 exploited · 0 CISA KEV · 0 public PoC · 0 EPSS ≥ 0.5
3matches 1in Waratek scope33.3% 0protected0.0% 0exploited0.0% 0CISA KEV0.0% 0public PoC0.0% 0EPSS ≥ 0.50.0%
Protected by Waratek 0 0.0% Rule in development 0 0.0% Mitigation candidate 0 0.0% No exploit published 1 33.3% Outside Waratek scope 0 0.0% Not applicable 2 66.7% Withdrawn CVE 0 0.0%
Critical 0 0.0% High 1 33.3% Medium 2 66.7% Low 0 0.0% None 0 0.0% Unknown 0 0.0%
blocked by ARMR today 0 0.0% partly blocked 0 0.0% not blocked 3 100.0% not established 0 0.0% unrecorded 0 0.0%
Exploited 0 0.0% Working exploit published 0 0.0% Proof of concept only 1 33.3% Forecast only 0 0.0% No public exploit 2 66.7%
split by peak 2 / quarter
Not applicable: 2No exploit published: 1 Medium: 2High: 1 not blocked: 3 No public exploit: 2Proof of concept only: 1
Q4 221 No exploit published1 High1 not blocked1 Proof of concept only1 Q1 230 Q2 230 Q3 230 Q4 230 Q1 240 Q2 240 Q3 240 Q4 240 Q1 250 Q2 250 Q3 250 Q4 250 Q1 262 Not applicable2 Medium2 not blocked2 No public exploit2
Q1 23Q3 23Q1 24Q3 24Q1 25Q3 25Q1 26
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CVE Severity Published▾ Status Exploitation Description
CVE-2026-31973 Medium 2026-03-18 Not applicable No public exploit SAMtools is a program for reading, manipulating and writing bioinformatics file formats. Starting in version 1.17, in the cram-size command, used to write information about how well CRAM files are compressed, a check to see if the `cram_decode_compression_header()` was missing. If the function returned an error, this could lead to a NULL pointer dereference. Exploiting this bug causes a NULL pointer dereference. Typically this will cause the program to crash. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.
CVE-2026-31972 Medium 2026-03-18 Not applicable No public exploit SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The `mpileup` command outputs DNA sequences that have been aligned against a known reference. On each output line it writes the reference position, optionally the reference DNA base at that position (obtained from a separate file) and all of the DNA bases that aligned to that position. As the output is ordered by position, reference data that is no longer needed is discarded once it has been printed out. Under certain conditions the data could be discarded too early, leading to an attempt to read from a pointer to freed memory. This bug may allow information about program state to be leaked. It may also cause a program crash through an attempt to access invalid memory. This bug is fixed in versions 1.21.1 and 1.22. There is no workaround for this issue.
CVE-2022-21126 High 2022-11-29 No exploit published Proof of concept only The package com.github.samtools:htsjdk before 3.0.1 are vulnerable to Creation of Temporary File in Directory with Insecure Permissions due to the createTempDir() function in util/IOUtil.java not checking for the existence of the temporary directory before attempting to create it.